Season 1 (1965–1966)[]
| No. | Title | Original airdate |
|---|---|---|
| 1 | "Sub Swiper" | 1965 October 2 |
| Secret and Morocco are assigned to locate a vanished atomic submarine in the hands of Captain Ahab. | ||
| 2 | "Masked Granny" | 1965 October 9 |
| Secret and Morocco have a mission to secure the Bombay Bomb in the Pentagon, whilst the Masked Granny undergoes a heist to steal it. | ||
| 3 | "Scotland Yard Caper" | 1965 October 16 |
| Secret receives orders from London to recover the stolen Crown and Jewels. He does, but is accused of being the thief himself. | ||
| 4 | "Robin Hood & His Merry Muggs" | 1965 October 23 |
| Secret and Morocco try to track down some thieves, who are using a Robin Hood television show to cover their thefts. | ||
| 5 | "Wolf in Cheap Cheap Clothing" | 1965 October 30 |
| Secret and Morocco are sent to stop Wily Wolf from smuggling sheep. Secret lures him into a trap with a Red Riding Hood scenario. | ||
| 6 | "Royal Run Around" | 1965 November 6 |
| Secret and Morocco are assigned to safeguard Pasha Panchabaggie, but Pasha rides away on his flying carpet and proves difficult to catch. | ||
| 7 | "Yellow Pinkie" | 1965 November 13 |
| Secret and Morocco are sent to catch an enemy agent called Yellow Pinkie, who seems too smart for them. | ||
| 8 | "Five Is a Crowd" | 1965 November 20 |
| Dr. Dangit creates duplicates of Secret Squirrel to commit crimes and frame the real one. Secret follows the duplicates to Dangit's hideouts and turns them against him. | ||
| 9 | "It Stopped Training" | 1965 November 27 |
| Secret and Morocco are put on a case to recover the Silver Streak Express train which is stolen by Yellow Pinkie with a shrinking ray gun. | ||
| 10 | "Wacky Secret Weapon" | 1965 December 4 |
| Secret and Morocco are assigned to protect a secret weapon only to lose it to Yellow Pinkie, but they pin him down at the seaport. | ||
| 11 | "Cuckoo Clock Cuckoo" | 1965 December 11 |
| Secret receives a mission from England to retrieve the Big Ben clock stolen by a giant to make a cuckoo clock out of it. | ||
| 12 | "Catty Cornered" | 1965 December 18 |
| Upon being called in by a scientist, Secret and Morocco attempt to catch what seems to be a cat containing explosive atoms inside. Unfortunately, a chasingdog makes their task difficult. | ||
| 13 | "Leave Wheel Enough Alone" | 1965 December 25 |
| Secret and Morocco try to catch Yellow Pinkie who stole all the gold from the mint, but will have to chase him in a car race first. | ||
| 14 | "Jester Minute" | 1966 January 1 |
| Secret and Morocco are sent to safeguard the king's crown only for it to be stolen by Yellow Pinkie and Secret thwarts his every traps. | ||
| 15 | "Not So Idle Idol" | 1966 January 8 |
| Yellow Pinkie steals a golden idol and only Secret can locate its whereabouts. | ||
| 16 | "Gold Rushed" | 1966 January 15 |
| While vacationing in Washington DC, Secret and Morocco chase after Yellow Pinkie who stole a gold bullion from the Granbovian Embassy. | ||
| 17 | "Double Ex-Double Cross" | 1966 January 22 |
| Secret and Morocco investigate the petrified population of Okey Dokey Isle. Then they nab the responsible perpetrator Double-Ex. | ||
| 18 | "Capt. Kidd's Not Kidding" | 1966 January 29 |
| Secret and Morocco go aboard a Spanish galleon to investigate the ghost of Captain Kidd who is actually Yellow Pinkie seeking gold. | ||
| 19 | "Bold Rush" | 1966 February 5 |
| Morocco takes the liberty of locating a gold shipment stolen by Yellow Pinkie all by himself. Secret discreetly assists during his vacation. | ||
| 20 | "Tusk-Tusk" | 1966 February 12 |
| Secret and Morocco try to find a missing elephant that was taken prisoner by the Grand Wazir to overthrow the Rajah. | ||
Season 2 (1966–1968)[]
| No. | Title | Original airdate |
|---|---|---|
| 21 | "Robot Rout" | 1966 September 10 |
| Yellow Pinkie is promoted president due to a mass robotic brainwashing on the citizens. Secret and Morocco head to Yellow Pinkie's lab to confront him, but he turns Morocco against Secret. | ||
| 22 | "The Pink Sky Mobile" | 1966 September 17 |
| Secret and Morocco battle Yellow Pinkie in his new Sky Mobile against their Spy Car. Both of them end up with scooting vehicles. | ||
| 23 | "Scuba Duba Duba" | 1966 September 24 |
| Secret and Morocco are assigned to recover a missile stolen by the spy Scuba Duba before he can destroy city under ransom. | ||
| 24 | "Hi-Spy" | 1966 October 29 |
| Secret is sent to confront the evil criminal scientist Hy Spy face-to-face in France, but Secret cannot outsmart him. | ||
| 25 | "Spy in the Sky" | 1966 November 12 |
| Hy Spy is intent causing destruction on the globe with his armed satellite. Secret and Morocco head to the satellite to halt his plans. | ||
| 26 | "Ship of Spies" | 1966 November 26 |
| Secret and Morocco are assigned to locate Hy Spy's invisible ship and put his plan out of action. | ||
Super Secret Squirrel (1993)[]
| No. | Title | Original airdate |
|---|---|---|
| 1 | "Goldflipper" | September 5, 1993 |
| An evil sea lion named Goldflipper creates a giant gold magnet that steals golden teeth. Secret Squirrel goes under cover as a Squirrely Girly scout to thwart the evil plan and recover all the stolen teeth. | ||
| 2 | "Greg" | September 12, 1993 |
|
Secret Squirrel investigates a mysterious candy disappearance caused by a gingerbread man named Greg. NOTE: This episode is never replayed on Boomerang arings because of Greg's rhyming-talk. Update: as of 7/30/2012 this episode has been replayed onBoomerang | ||
| 3 | "Quark" | September 19, 1993 |
| A sub-atomic particle is destroying important monuments in order to make an amphitheater out of North America and Secret Squirrel has to shrink down to an atomic size to stop him. | ||
| 4 | "Queen Bea" | September 26, 1993 |
| Queen Bea and her honey bee henchmen capture Secret Squirrel during a Honey Bank robbery so that Queen Bea can force Secret Squirrel's hand in marriage, but Penny comes to his rescue. | ||
| 5 | "Hot Rodney" | October 3, 1993 |
| During a race against a racing rooster named Hot Rodney, Secret Squirrel is waylaid by Hot Rodney's orchestrated kidnapping of Morocco. | ||
| 6 | "Egg" | October 10, 1993 |
| Morocco Mole receives a mandatory special assignment to hold a "rare" egg for at least three seconds, but has a hard time doing so. | ||
| 7 | "Chameleon" | October 17, 1993 |
| Expensive paintings are stolen on the night of a museum gala and Secret Squirrel discovers an art-loving, sophisticated chameleon has pilfered all the art for his own personal collection. | ||
| 8 | "Agent Penny" | October 24, 1993 |
| In an attempt to cut down his expenses, the Chief replaces Secret Squirrel with Penny and hires Morocco as his secretary. Snooper and Blabber make speaking cameo appearances. | ||
| 9 | "Scirocco Mole" | October 31, 1993 |
| In a quiz show hosted by a fox, Secret Squirrel briefs the origin of his partnership with Morocco and the encounter with Morocco's evil twin brother Scirocco. Yogi Bear, Boo-Boo Bear, Big Dog and Little Dog make cameo appearances as the other contestants. | ||
| 10 | "Platypus" | November 7, 1993 |
| Secret Squirrel, Morocco Mole and the Chief get their bodies mixed in Platypus' descrambler and have a hard time catching him in their states. | ||
| 11 | "Doctor O" | November 14, 1993 |
| Secret Squirrel has to stop an opossum named Doctor O from blocking out the sun with a satellite, but he has to do it blind in total darkness. | ||
| 12 | "One Ton" | November 21, 1993 |
| Secret Squirrel attempts to stop a crazy panda called One-Ton (wordplay on won ton), but Secret Squirrel has orders from the Chief not to harm the endangered panda. | ||
| 13 | "Voodoo Goat" | November 28, 1993 |
| Secret Squirrel must stop an evil shaman goat who makes a voodoo doll of the Chief in order to gain power over the agency. | ||